I have written a Python Script inside Spaceclaim which generates me a Geometry and assigns some NamedSelections. 
When I try to run the same script using PyAnsys:
modeler = launch_modeler_with_spaceclaim()
modeler.run_discovery_script_file()
the Results unfortunately differ 
It seems to mix up the bodies when I try to use the combine tool and therefore deletes the wrong body. In addition also the faces are mixed up and the NamedSelections are not at the correct position.
Is there any workaround for this issue?